Molecular Biology Tools

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General DNA / Protein Database Search & Analysis Tools

• BLAST search tool in NCBI
  Major resource for molecular biology information, NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing ...A national resource for molecular biology information for the better understanding of molecular processes..
• PEDRO's research tools (Iowa State University) Pedro's BioMolecular Research Tools.Part 1: Molecular Biology Search and Analysis. It contains several different tools for both DNA and protein sequence search and analysis.
• Baylor College of Medicine - Genome project .  BCM Search Launcher
   on-going project to organize molecular biology-related search and analysis services available on the web.
• CMS Molecular Biology Resource Sequence Search & Analysis Tools Sequence Databases Structure Prediction & Databases. ID Based Upon Physical & Chemical Data Physico-Chemical Features .
• Molecular Biology Tools Table (Japan) Quick link Table with several resources.
• Arabidopsis thaliana related data bases

  1.Arabidopsis Links - The links have detailed information about seed stocks, how to grow and store Arabidopsis, the control of pests and diseases, as well as information about the other aspects.
  2.AIMS: Arabidopsis Information Management System - 
  3.Arabidopsis cDNA Sequence Analysis Project - This project is a joint effort between the University of Minnesota and Michigan State University DOE Plant Research Laboratory.
  4.LEHLE SEEDS Austin based company specializing in Arabidopsis related research
  products.
  

DNA Sequence Analysis Tools

• Primer Design  A collection of software to help you design primers or check the Tm, GC% of your primers.
• Primer check Small sofware to check the Tm and GC content of your primers.
• NEB-Cutter in New England Biolabs company website. It gives a linear map.
• Webcutter 2.0 (Restriction Analysis). Please enter a
  title for this sequence: Paste the DNA sequence into the given box . If the link does not work, search 
• Windsor's Links: Molecular Biology Tools Molecular Biology Tools: ... General- Multiple Tool Sites: ... Restriction Enzymes/Digestion Predictions:
• DNAdraw, Several sequence analysis tools including a plasmid drawing program for Mac; Sequence Interpretation Tools (SIT); by Paul N. Hengen through ExPASy Molecular Biology Server; Delila (DNA Library Language) programs for DNA analysis.
  

Protein Sequence Analysis Tools

• ExPASy Molecular Biology Server
  Links to many other molecular biology databases.  
  Multiple resources dedicated to the analysis of protein sequences and structures as well as 2-D PAGE..
• Tools for Biochemistry & Molecular Biology
  Amino Acid Sequence Analysis Tools - GIF Images, Postscript ... National Lab, Biology Department.
• CyberGenome Tools - Analysis
  PRATT Identify motifs in a protein sequence using this tool at EMBL ... user entered patterns. SMART Comparative sequence analysis of proteins.
• 123 Genomics - Sequence analysis, data mining, gene hunting, ...
  GenViewer: Predicting and analysis of protien-coding gene structures Glimmer: A ... Protein Sequence Analysis: Proteomics Tools: Several useful tools for .both DNA and protein sequence analysis.
• Protein Structure Prediction: This has several links for protein secondary structure prediction.
  

Literature Search

• UT-Austin Gateway for Literature Search. Collection of several entry points and online literature resources.
• Biology Indexes- List of several abstract services - available freely online. Includes Medline and many other database search resources.
• LSU Libraries -- Molecular Biology Internet Resources:
  A compendium of electronic and Internet-accessible tools and resources for molecular biology, biotechnology, molecular evolution, biochemistry, and biomolecular search.
  

Molecular Biology - Protocols 

• Cell and Molecular Biology Online - Protocols
  Includes updated information about biological methods, research tools and reagents. REBASE- (The Restriction Enzyme analysis of vectors commonly used in molecular biology and much more.

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List maintained by 

K. Sathasivan, Ph.D.

The University of Texas at Austin.

Please let me know if you found another useful link or any suggestions to modify this list. 

E-mail to K. Sathasivan.