Molecular Biology Tools
General DNA / Protein Database Search &
- BLAST search
tool in NCBI
Major resource for molecular biology information, NCBI creates public databases, conducts
research in computational biology, develops software tools for analyzing ...A national resource for molecular biology information for the better understanding of molecular
- PEDRO's research
tools (Iowa State University) Pedro's BioMolecular Research Tools.Part 1: Molecular
Biology Search and Analysis. It contains several different tools for both
DNA and protein sequence search and analysis.
- Baylor College of
Medicine - Genome project . BCM Search Launcher
on-going project to organize molecular biology-related search and analysis services
available on the web.
- CMS Molecular Biology Resource
Sequence Search & Analysis Tools Sequence Databases Structure Prediction & Databases.
ID Based Upon Physical & Chemical Data Physico-Chemical Features .
- Molecular Biology
Tools Table (Japan) Quick link Table with several resources.
thaliana related data bases
1.Arabidopsis Links - The
links have detailed information about seed stocks, how to grow and store
Arabidopsis, the control of pests and diseases, as well as information about the other
2.AIMS: Arabidopsis Information Management System -
3.Arabidopsis cDNA Sequence Analysis Project
- This project is a joint effort between the University of Minnesota and
Michigan State University DOE Plant Research Laboratory.
4.LEHLE SEEDS Austin based company specializing in Arabidopsis related research
DNA Sequence Analysis Tools
Design A collection of software to help you design primers or check
the Tm, GC% of your primers.
Primer check Small sofware to check the Tm and GC content of your primers.
- NEB-Cutter in New
England Biolabs company website. It gives a linear map.
- Webcutter 2.0 (Restriction Analysis). Please enter a
title for this sequence: Paste the DNA sequence into the given box . If the
link does not work, search
- Windsor's Links: Molecular Biology Tools
Molecular Biology Tools: ... General- Multiple Tool Sites: ... Restriction Enzymes/Digestion Predictions:
- DNAdraw, Several sequence
analysis tools including a plasmid drawing program for Mac; Sequence Interpretation Tools
(SIT); by Paul N. Hengen through ExPASy Molecular Biology Server; Delila (DNA Library Language) programs for DNA
Protein Sequence Analysis Tools
- ExPASy Molecular Biology Server
Links to many other molecular biology databases.
Multiple resources dedicated to the analysis of protein sequences and structures as well as 2-D
- Tools for Biochemistry & Molecular Biology
Amino Acid Sequence Analysis Tools - GIF Images, Postscript ... National Lab, Biology
- CyberGenome Tools - Analysis
PRATT Identify motifs in a protein sequence using this tool at EMBL ... user entered
patterns. SMART Comparative sequence analysis of proteins.
- 123 Genomics
- Sequence analysis, data mining, gene hunting, ...
GenViewer: Predicting and analysis of protien-coding gene structures Glimmer: A ... Protein
Sequence Analysis: Proteomics Tools: Several useful tools for .both DNA and
protein sequence analysis.
Structure Prediction: This has several links for protein secondary
Molecular Biology - Protocols
- Cell and Molecular Biology Online - Protocols
Includes updated information about biological methods, research tools and reagents. REBASE-
(The Restriction Enzyme analysis of vectors commonly used in molecular
biology and much more.
List maintained by
K. Sathasivan, Ph.D.
The University of Texas
Please let me know if you found another useful link or any suggestions to
modify this list.
E-mail to K. Sathasivan.