Molecular Biology Tools

General DNA / Protein Database Search & Analysis Tools

• BLAST search tool in NCBI
  Major resource for molecular biology information, NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing ...A national resource for molecular biology information for the better understanding of molecular processes..
• PEDRO's research tools (Iowa State University)Pedro's BioMolecular Research Tools. ... Part 1: Molecular Biology Search and Analysis. It contains several different tools for both DNA and protein sequence search and analysis.
• Baylor College of Medicine - Genome project .  BCM Search Launcher
   on-going project to organize molecular biology-related search and analysis services available on the web.
• Molecular Biology Tools Table (Japan) Quick link Table with several resources.
• Weizmann Institute -Bioinformatics Resources Molecular Biology Software for. biological applications. Java-based Molecular Biology Work Bench.
  

DNA Sequence Analysis Tools

• NEB Cutter: New England Biolabs website for restriction enzyme site analysis.
• Molecular Biology Tools Webcutter version 2.0 (Restriction Analysis). Please enter a
  title for this sequence: Paste the DNA sequence into the box given and submit.
• Windsor's Links: Molecular Biology Tools Molecular Biology Tools: ... General- Multiple Tool Sites: ... Restriction Enzymes/Digestion Predictions:
• DNAdraw, a plasmid drawing program for Mac; Sequence Interpretation Tools (SIT); by Paul N. Hengen through ExPASy Molecular Biology Server; Delila (DNA Library Language) programs for DNA analysis.
  

Protein Sequence Analysis Tools

• ExPASy Molecular Biology Server
  Links to many other molecular biology databases.  
  Multiple resources dedicated to the analysis of protein sequences and structures as well as 2-D PAGE..
• Tools for Biochemistry & Molecular Biology
  Amino Acid Sequence Analysis Tools - GIF Images, Postscript ... National Lab, Biology Department.
• CyberGenome Tools - Analysis
  PRATT Identify motifs in a protein sequence using this tool at EMBL ... user entered patterns. SMART Comparative sequence analysis of proteins.
• 123 Genomics - Sequence analysis, data mining, gene hunting, ...
  GenViewer: Predicting and analysis of protien-coding gene structures Glimmer: A ... Protein Sequence Analysis: Proteomics Tools: Several useful tools for .both DNA and protein sequence analysis.
  

Arabidopsis related data bases

1.TAIR The Arabidopsis information Resource
2.Arabidopsis cDNA Sequence Analysis Project - This project is a joint effort between the University of Minnesota and Michigan State University DOE Plant Research Laboratory.
3.LEHLE SEEDS Austin based company specializing in Arabidopsis related research products.

Literature Search

• UT-Austin Gateway for Literature Search. Collection of several entry points and online literature resources.
  

Molecular Biology - Protocols 

• Cell and Molecular Biology Online - Protocols
  Includes updated information about biological methods, research tools and reagents. REBASE- (The Restriction Enzyme ... of vectors commonly used in molecular biology. ...and more.